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RPRD2 regulation of nuclear pre-mRNA domain containing 2 [ Nipponia nippon (crested ibis) ]

Gene ID: 104018289, updated on 12-Mar-2024

Summary

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Gene symbol
RPRD2
Gene description
regulation of nuclear pre-mRNA domain containing 2
Locus tag
Y956_08556
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009002298.1 (383630..405620, complement)

NW_009002298.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S27 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene pre-mRNA processing factor 3 Neighboring gene carbonic anhydrase 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009002298.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, holoenzyme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulation of nuclear pre-mRNA domain-containing protein 2
Names
Regulation of nuclear pre-mRNA domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_009002298.1 Reference ASM70822v1 Primary Assembly

    Range
    383630..405620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009471413.1 → XP_009469688.1  regulation of nuclear pre-mRNA domain-containing protein 2

    UniProtKB/TrEMBL
    A0A091VP18
    Conserved Domains (2) summary
    pfam16122
    Location:349 → 408
    40S_SA_C; 40S ribosomal protein SA C-terminus
    cl02544
    Location:23 → 107
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
Nucleotide Protein
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