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CALB2 calbindin 2 [ Nipponia nippon (crested ibis) ]

Gene ID: 104017490, updated on 12-Mar-2024

Summary

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Gene symbol
CALB2
Gene description
calbindin 2
Locus tag
Y956_09275
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Also known as
Calretinin
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009001916.1 (1618161..1624539, complement)

NW_009001916.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 38 member 7 Neighboring gene glutamic-oxaloacetic transaminase 2 Neighboring gene purine nucleoside phosphorylase Neighboring gene cap methyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009001916.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of long-term synaptic potentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynaptic cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in terminal bouton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calretinin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_009001916.1 Reference ASM70822v1 Primary Assembly

    Range
    1618161..1624539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009470521.1 → XP_009468796.1  calretinin

    Conserved Domains (2) summary
    cd00051
    Location:162 → 231
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:164 → 231
    EF-hand_7; EF-hand domain pair
Nucleotide Protein
Heading Accession and Version

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