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GABPB1 GA binding protein transcription factor subunit beta 1 [ Nipponia nippon (crested ibis) ]

Gene ID: 104017115, updated on 12-Mar-2024

Summary

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Gene symbol
GABPB1
Gene description
GA binding protein transcription factor subunit beta 1
Locus tag
Y956_09784
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009001792.1 (11747786..11771394, complement)

NW_009001792.1Genomic Context describing neighboring genes Neighboring gene histidine decarboxylase-like Neighboring gene histidine decarboxylase-like Neighboring gene ubiquitin specific peptidase 8 Neighboring gene ubiquitin specific peptidase 50

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009001792.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GA-binding protein subunit beta-1
Names
GA binding protein transcription factor beta subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_009001792.1 Reference ASM70822v1 Primary Assembly

    Range
    11747786..11771394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009470110.1 → XP_009468385.1  GA-binding protein subunit beta-1

    See identical proteins and their annotated locations for XP_009468385.1

    UniProtKB/TrEMBL
    A0A091VIU0
    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam16566
    Location:329 → 378
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor
Nucleotide Protein
Heading Accession and Version

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