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DENND4A DENN domain containing 4A [ Nipponia nippon (crested ibis) ]

Gene ID: 104017051, updated on 12-Mar-2024

Summary

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Gene symbol
DENND4A
Gene description
DENN domain containing 4A
Locus tag
Y956_09671
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009001792.1 (3124407..3164205)

NW_009001792.1Genomic Context describing neighboring genes Neighboring gene multiple EGF like domains 11 Neighboring gene RAB11A, member RAS oncogene family Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene solute carrier family 24 member 1 Neighboring gene integrator complex subunit 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009001792.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-myc promoter-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_009001792.1 Reference ASM70822v1 Primary Assembly

    Range
    3124407..3164205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009470025.1 → XP_009468300.1  C-myc promoter-binding protein

    UniProtKB/TrEMBL
    A0A091WLW9
    Conserved Domains (6) summary
    smart00801
    Location:559 → 632
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:193 → 275
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    sd00004
    Location:810 → 839
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:309 → 492
    DENN; DENN (AEX-3) domain
    pfam10240
    Location:43 → 198
    DUF2464; Protein of unknown function (DUF2464)
    pfam13041
    Location:808 → 848
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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