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DDX42 DEAD-box helicase 42 [ Nipponia nippon (crested ibis) ]

Gene ID: 104012259, updated on 12-Mar-2024

Summary

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Gene symbol
DDX42
Gene description
DEAD-box helicase 42
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009000169.1 (1776233..1792944, complement)

NW_009000169.1Genomic Context describing neighboring genes Neighboring gene myosin light chain 4 Neighboring gene parathyroid hormone/parathyroid hormone-related peptide receptor-like Neighboring gene coiled-coil domain containing 47 Neighboring gene STE20 related adaptor alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009000169.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_009000169.1 Reference ASM70822v1 Primary Assembly

    Range
    1776233..1792944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009464625.1 → XP_009462900.1  ATP-dependent RNA helicase DDX42

    Conserved Domains (3) summary
    PRK10590
    Location:253 → 690
    PRK10590; ATP-dependent RNA helicase RhlE; Provisional
    cd00079
    Location:469 → 600
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:254 → 458
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
Nucleotide Protein
Heading Accession and Version

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