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BRD1 bromodomain containing 1 [ Nipponia nippon (crested ibis) ]

Gene ID: 104010712, updated on 12-Mar-2024

Summary

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Gene symbol
BRD1
Gene description
bromodomain containing 1
Locus tag
Y956_10471
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008999783.1 (3523226..3582856)

NW_008999783.1Genomic Context describing neighboring genes Neighboring gene ALG12 alpha-1,6-mannosyltransferase Neighboring gene zinc finger BED-type containing 4 Neighboring gene RNA-directed DNA polymerase from mobile element jockey-like Neighboring gene TAFA chemokine like family member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008999783.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MOZ/MORF histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bromodomain-containing protein 1
Names
Bromodomain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_008999783.1 Reference ASM70822v1 Primary Assembly

    Range
    3523226..3582856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009462866.1 → XP_009461141.1  bromodomain-containing protein 1 isoform X2

    Conserved Domains (5) summary
    cd05839
    Location:927 → 1042
    BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
    cd05512
    Location:566 → 663
    Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
    cd15677
    Location:214 → 267
    PHD_BRPF2; PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like

  2. XM_009462865.1 → XP_009461140.1  bromodomain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_009461140.1

    UniProtKB/TrEMBL
    A0A091UWD8
    Conserved Domains (5) summary
    cd05839
    Location:1055 → 1170
    BR140_related; The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, ...
    cd05512
    Location:566 → 663
    Bromo_brd1_like; Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. ...
    cd15677
    Location:214 → 267
    PHD_BRPF2; PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    cd15702
    Location:271 → 388
    ePHD_BRPF2; Extended PHD finger found in bromodomain and PHD finger-containing protein 2 (BRPF2) and similar proteins
    pfam10513
    Location:47 → 196
    EPL1; Enhancer of polycomb-like
Nucleotide Protein
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