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SYCP1 synaptonemal complex protein 1 [ Nipponia nippon (crested ibis) ]

Gene ID: 104010335, updated on 12-Mar-2024

Summary

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Gene symbol
SYCP1
Gene description
synaptonemal complex protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008999672.1 (1980245..2007276)

NW_008999672.1Genomic Context describing neighboring genes Neighboring gene suppressor of IKBKE 1 Neighboring gene bile acid receptor-like Neighboring gene thyroid stimulating hormone subunit beta Neighboring gene tetraspanin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008999672.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chiasma assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lateral element assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic DNA repair synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptonemal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in central element IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in male germ cell nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptonemal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in transverse filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptonemal complex protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_008999672.1 Reference ASM70822v1 Primary Assembly

    Range
    1980245..2007276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009462444.1 → XP_009460719.1  synaptonemal complex protein 1

    Conserved Domains (2) summary
    pfam05483
    Location:36 → 796
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    pfam06273
    Location:550 → 607
    eIF-4B; Plant specific eukaryotic initiation factor 4B
Nucleotide Protein
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