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GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 [ Nipponia nippon (crested ibis) ]

Gene ID: 104009448, updated on 12-Mar-2024

Summary

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Gene symbol
GALNT18
Gene description
polypeptide N-acetylgalactosaminyltransferase 18
Locus tag
Y956_04569
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008999370.1 (9448411..9698442)

NW_008999370.1Genomic Context describing neighboring genes Neighboring gene dickkopf WNT signaling pathway inhibitor 3 Neighboring gene ubiquitin specific peptidase 47 Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene CTR9 homolog, Paf1/RNA polymerase II complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008999370.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_008999370.1 Reference ASM70822v1 Primary Assembly

    Range
    9448411..9698442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009461447.1 → XP_009459722.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X1

    Conserved Domains (4) summary
    cd02510
    Location:157 → 458
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:471 → 598
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:469 → 596
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam10111
    Location:158 → 419
    Glyco_tranf_2_2; Glycosyltransferase like family 2

  2. XM_009461448.1 → XP_009459723.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X2

    Conserved Domains (4) summary
    cd02510
    Location:152 → 453
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:466 → 593
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:464 → 591
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam10111
    Location:153 → 414
    Glyco_tranf_2_2; Glycosyltransferase like family 2
Nucleotide Protein
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