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WDSUB1 WD repeat, sterile alpha motif and U-box domain containing 1 [ Pygoscelis adeliae (Adelie penguin) ]

Gene ID: 103925322, updated on 11-Mar-2024

Summary

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Gene symbol
WDSUB1
Gene description
WD repeat, sterile alpha motif and U-box domain containing 1
Locus tag
AS28_02169
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygoscelis adeliae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Sphenisciformes; Spheniscidae; Pygoscelis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM69910v1 (GCF_000699105.1) Unplaced Scaffold NW_008824058.1 (257490..283719)

NW_008824058.1Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 7 Neighboring gene bromodomain adjacent to zinc finger domain 2B Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 Neighboring gene death associated protein like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008824058.1 Unplaced Scaffold Reference ASM69910v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat, SAM and U-box domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygoscelis adeliae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69910v1 Primary Assembly

Genomic

  1. NW_008824058.1 Reference ASM69910v1 Primary Assembly

    Range
    257490..283719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009334019.1 → XP_009332294.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A093NDR5
    Conserved Domains (6) summary
    cd09505
    Location:329 → 399
    SAM_WDSUB1; SAM domain of WDSUB1 proteins
    smart00454
    Location:329 → 394
    SAM; Sterile alpha motif
    COG2319
    Location:3 → 330
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:4 → 309
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04564
    Location:404 → 476
    U-box; U-box domain
    sd00039
    Location:18 → 52
    7WD40; WD40 repeat [structural motif]

  2. XM_009334020.1 → XP_009332295.1  WD repeat, SAM and U-box domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A093NDR5
    Conserved Domains (6) summary
    smart00454
    Location:329 → 377
    SAM; Sterile alpha motif
    COG2319
    Location:3 → 330
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:4 → 309
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:18 → 52
    7WD40; WD40 repeat [structural motif]
    cl15755
    Location:329 → 377
    SAM_superfamily; SAM (Sterile alpha motif )
    cl17238
    Location:370 → 429
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
Heading Accession and Version

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