Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    Hipma_0516 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [ Hippea maritima DSM 10411 ]

    Gene ID: 10391843, updated on 18-May-2013
    Gene symbol
    Hipma_0516
    Gene description
    aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
    Locus tag
    Hipma_0516
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Hippea maritima DSM 10411 (strain: DSM 10411, culture-collection: DSMZ:DSM 10411)
    Lineage
    Bacteria; Proteobacteria; Deltaproteobacteria; Desulfurellales; Desulfurellaceae; Hippea
    Location :
    country: Papua New Guinea: Matupi Harbour, isolation source: marine sediment from hot vent of tidal zone, other: 4.233333 S 152.20 E
    Sequence :
    NC_015318.1 (518706..520133)

    NC_015318.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene phosphoribosylformylglycinamidine cyclo-ligase Neighboring gene phosphoribosylglycinamide formyltransferase Neighboring gene dihydroorotase, multifunctional complex type Neighboring gene acetyl-coenzyme A carboxylase carboxyl transferase subunit beta Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)). Huntemann M, et al. Stand Genomic Sci, 2011 Jul 1. PMID 21886857.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
    YP_004339546.1
    • COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)~HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit~InterPro IPR018027; IPR004413; IPR006075~KEGG: tye:THEYE_A1151 glu-tRNAGln amidotransferase subunit B~PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase~SMART: Asn/Gln amidotransferase~SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B;~TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit~PFAM: GatB/GatE catalytic domain; GatB domain~TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_015318.1

      Range
      518706..520133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_004339546.1 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [Hippea maritima DSM 10411]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F2LUG1
      Conserved Domains (3) summary
      PRK05477
      Location:1 – 472
      Blast Score: 2303
      gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
      smart00845
      Location:326 – 472
      Blast Score: 549
      GatB_Yqey; GatB domain
      pfam02934
      Location:4 – 288
      Blast Score: 1430
      GatB_N; GatB/GatE catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    genomic CP002606.1 AEA33487.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

      Related sites

      Feedback

      Subscription

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...