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SETD1B SET domain containing 1B, histone lysine methyltransferase [ Pygoscelis adeliae (Adelie penguin) ]

Gene ID: 103914561, updated on 11-Mar-2024

Summary

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Gene symbol
SETD1B
Gene description
SET domain containing 1B, histone lysine methyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygoscelis adeliae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Sphenisciformes; Spheniscidae; Pygoscelis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM69910v1 (GCF_000699105.1) Unplaced Scaffold NW_008824469.1 (1109699..1159468)

NW_008824469.1Genomic Context describing neighboring genes Neighboring gene ras homolog family member F, filopodia associated Neighboring gene uncharacterized LOC103914531 Neighboring gene 4-hydroxyphenylpyruvate dioxygenase Neighboring gene proteasome 26S subunit, non-ATPase 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008824469.1 Unplaced Scaffold Reference ASM69910v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Set1C/COMPASS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETD1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygoscelis adeliae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69910v1 Primary Assembly

Genomic

  1. NW_008824469.1 Reference ASM69910v1 Primary Assembly

    Range
    1109699..1159468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009321225.1 → XP_009319500.1  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETD1B

    Conserved Domains (6) summary
    smart00317
    Location:1823 → 1938
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    smart00508
    Location:1939 → 1955
    PostSET; Cysteine-rich motif following a subset of SET domains
    COG0724
    Location:76 → 256
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG2940
    Location:1776 → 1955
    SET; SET domain-containing protein (function unknown) [General function prediction only]
    cd12549
    Location:68 → 160
    RRM_Set1B; RNA recognition motif in vertebrate histone-lysine N-methyltransferase Setd1B (Set1B)
    pfam11764
    Location:1668 → 1806
    N-SET; COMPASS (Complex proteins associated with Set1p) component N
Nucleotide Protein
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