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COL9A1 collagen type IX alpha 1 chain [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103896023, updated on 11-Mar-2024

Summary

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Gene symbol
COL9A1
Gene description
collagen type IX alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008795021.1 (3564856..3653248)

NW_008795021.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase complex assembly factor 4 Neighboring gene family with sequence similarity 135 member A Neighboring gene collagen type XIX alpha 1 chain Neighboring gene LMBR1 domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008795021.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(IX) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008795021.1 Reference ASM69914v1

    Range
    3564856..3653248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009275787.1 → XP_009274062.1  collagen alpha-1(IX) chain

    See identical proteins and their annotated locations for XP_009274062.1

    Conserved Domains (2) summary
    pfam01391
    Location:536 → 595
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:50 → 244
    TSPN; Thrombospondin N-terminal -like domains

  2. XM_009275786.1 → XP_009274061.1  collagen alpha-1(IX) chain

    See identical proteins and their annotated locations for XP_009274061.1

    Conserved Domains (2) summary
    pfam01391
    Location:536 → 595
    Collagen; Collagen triple helix repeat (20 copies)
    smart00210
    Location:50 → 244
    TSPN; Thrombospondin N-terminal -like domains
Nucleotide Protein
Heading Accession and Version

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