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LOC103874754 protein LOL1 [ Brassica rapa (field mustard) ]

Gene ID: 103874754, updated on 28-Aug-2022

Summary

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Gene symbol
LOC103874754
Gene description
protein LOL1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
BrLOL1
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Genomic context

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Location:
chromosome: A5
Exon count:
6
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A05 NC_024799.2 (16955582..16958012, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A6 NC_024800.1 (20464828..20467214)

Chromosome A05 - NC_024799.2Genomic Context describing neighboring genes Neighboring gene TPD1 protein homolog 1 Neighboring gene TNF receptor-associated factor homolog 1b-like Neighboring gene microRNA MIR5654a Neighboring gene MND1-interacting protein 1 Neighboring gene increased DNA methylation 1-like Neighboring gene protein ABCI7, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein LOL1
Names
LSD-One-Like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302021.1 → NP_001288950.1  protein LOL1

    See identical proteins and their annotated locations for NP_001288950.1

    Status: PROVISIONAL

    Source sequence(s)
    AB193295
    UniProtKB/TrEMBL
    Q53UG6
    Conserved Domains (1) summary
    pfam06943
    Location:77 → 101
    zf-LSD1; LSD1 zinc finger

RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024799.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    16955582..16958012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009153190.3 → XP_009151438.1  protein LOL1 isoform X2

    See identical proteins and their annotated locations for XP_009151438.1

    UniProtKB/TrEMBL
    Q53UG6
    Conserved Domains (1) summary
    pfam06943
    Location:77 → 101
    zf-LSD1; LSD1 zinc finger

  2. XM_009153189.3 → XP_009151437.1  protein LOL1 isoform X1

    UniProtKB/TrEMBL
    A0A3P5Z715, M4D122
    Conserved Domains (1) summary
    pfam06943
    Location:77 → 101
    zf-LSD1; LSD1 zinc finger
Nucleotide Protein Strain
Heading Accession and Version

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