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TRIM9 tripartite motif containing 9 [ Serinus canaria (Common canary) ]

Gene ID: 103826829, updated on 11-Mar-2024

Summary

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Gene symbol
TRIM9
Gene description
tripartite motif containing 9
See related
EnsemblRapid:ENSSCAG00000001757
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 5 NC_066319.1 (60072557..60140971)

Chromosome 5 - NC_066319.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127059697 Neighboring gene FERM domain containing 6 Neighboring gene uncharacterized LOC127059698 Neighboring gene thioredoxin related transmembrane protein 1 Neighboring gene glycogen phosphorylase L Neighboring gene abhydrolase domain containing 12B Neighboring gene ninein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066319.1 Chromosome 5 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066319.1 Reference serCan2020 Primary Assembly

    Range
    60072557..60140971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030239969.2 → XP_030095829.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

    Conserved Domains (6) summary
    smart00502
    Location:271 → 397
    BBC; B-Box C-terminal domain
    cd00063
    Location:439 → 530
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:610 → 775
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:221 → 269
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:164 → 210
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  2. XM_050975447.1 → XP_050831404.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

  3. XM_030239970.2 → XP_030095830.1  E3 ubiquitin-protein ligase TRIM9 isoform X4

    Related
    ENSSCAP00000002068.2, ENSSCAT00000002439.2
    Conserved Domains (6) summary
    smart00502
    Location:271 → 397
    BBC; B-Box C-terminal domain
    cd00063
    Location:439 → 530
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:527 → 698
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:5 → 52
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:221 → 269
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:164 → 210
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins

  4. XM_050975446.1 → XP_050831403.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

  5. XM_050975448.1 → XP_050831405.1  E3 ubiquitin-protein ligase TRIM9 isoform X5

  6. XM_050975449.1 → XP_050831406.1  E3 ubiquitin-protein ligase TRIM9 isoform X6

  7. XM_030239971.2 → XP_030095831.1  E3 ubiquitin-protein ligase TRIM9 isoform X6

    Conserved Domains (5) summary
    smart00502
    Location:271 → 397
    BBC; B-Box C-terminal domain
    cd00063
    Location:439 → 530
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:10 → 49
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:221 → 269
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:5 → 52
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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