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RBBP4 RB binding protein 4, chromatin remodeling factor [ Serinus canaria (Common canary) ]

Gene ID: 103823487, updated on 3-Apr-2024

Summary

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Gene symbol
RBBP4
Gene description
RB binding protein 4, chromatin remodeling factor
See related
EnsemblRapid:ENSSCAG00000005041
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 23 NC_066336.1 (4772256..4779870)

Chromosome 23 - NC_066336.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127060398 Neighboring gene zinc finger and BTB domain containing 8 opposite strand Neighboring gene syncoilin, intermediate filament protein Neighboring gene NHS like 3 Neighboring gene tyrosyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066336.1 Chromosome 23 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESC/E(Z) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-binding protein RBBP4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066336.1 Reference serCan2020 Primary Assembly

    Range
    4772256..4779870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050983263.1 → XP_050839220.1  histone-binding protein RBBP4 isoform X1

    Related
    ENSSCAP00000006463.2, ENSSCAT00000007374.2

  2. XM_050983264.1 → XP_050839221.1  histone-binding protein RBBP4 isoform X2

  3. XM_018923619.3 → XP_018779164.1  histone-binding protein RBBP4 isoform X3

    UniProtKB/TrEMBL
    A0A8C9MP82
    Related
    ENSSCAP00000026067.1, ENSSCAT00000039980.1
    Conserved Domains (3) summary
    sd00039
    Location:93 → 140
    7WD40; WD40 repeat [structural motif]
    pfam12265
    Location:1 → 53
    CAF1C_H4-bd; Histone-binding protein RBBP4 or subunit C of CAF1 complex
    cl29593
    Location:87 → 368
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_009098566.4 → XP_009096814.1  histone-binding protein RBBP4 isoform X3

    See identical proteins and their annotated locations for XP_009096814.1

    UniProtKB/TrEMBL
    A0A8C9MP82
    Conserved Domains (3) summary
    sd00039
    Location:93 → 140
    7WD40; WD40 repeat [structural motif]
    pfam12265
    Location:1 → 53
    CAF1C_H4-bd; Histone-binding protein RBBP4 or subunit C of CAF1 complex
    cl29593
    Location:87 → 368
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  5. XM_030232077.2 → XP_030087937.1  histone-binding protein RBBP4 isoform X3

    UniProtKB/TrEMBL
    A0A8C9MP82
    Conserved Domains (3) summary
    sd00039
    Location:93 → 140
    7WD40; WD40 repeat [structural motif]
    pfam12265
    Location:1 → 53
    CAF1C_H4-bd; Histone-binding protein RBBP4 or subunit C of CAF1 complex
    cl29593
    Location:87 → 368
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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