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SQSTM1 sequestosome 1 [ Serinus canaria (Common canary) ]

Gene ID: 103817294, updated on 11-Mar-2024

Summary

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Gene symbol
SQSTM1
Gene description
sequestosome 1
See related
EnsemblRapid:ENSSCAG00000011545
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 13 NC_066327.1 (11384559..11388933)

Chromosome 13 - NC_066327.1Genomic Context describing neighboring genes Neighboring gene mastermind like transcriptional coactivator 1 Neighboring gene leukotriene C4 synthase Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B Neighboring gene MRN complex interacting protein Neighboring gene TBC1 domain family member 9B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066327.1 Chromosome 13 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase C binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aggrephagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in aggresome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in amphisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sequestosome-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066327.1 Reference serCan2020 Primary Assembly

    Range
    11384559..11388933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009091436.4 → XP_009089684.2  sequestosome-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9NCJ8
    Related
    ENSSCAP00000015769.2, ENSSCAT00000017660.2
    Conserved Domains (3) summary
    cd02340
    Location:117 → 159
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cl02720
    Location:4 → 93
    PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
    cl21463
    Location:392 → 453
    UBA_like_SF; UBA domain-like superfamily

  2. XM_009091437.4 → XP_009089685.2  sequestosome-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C9NAA1
    Related
    ENSSCAP00000015775.2, ENSSCAT00000017666.2
    Conserved Domains (3) summary
    cd02340
    Location:117 → 159
    ZZ_NBR1_like; Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears ...
    cl02720
    Location:4 → 93
    PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
    cl21463
    Location:362 → 423
    UBA_like_SF; UBA domain-like superfamily
Nucleotide Protein
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