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ATG4B autophagy related 4B cysteine peptidase [ Serinus canaria (Common canary) ]

Gene ID: 103815518, updated on 11-Mar-2024

Summary

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Gene symbol
ATG4B
Gene description
autophagy related 4B cysteine peptidase
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 9 NC_066323.1 (20762598..20782712, complement)

Chromosome 9 - NC_066323.1Genomic Context describing neighboring genes Neighboring gene D-2-hydroxyglutarate dehydrogenase Neighboring gene inhibitor of growth family member 5 Neighboring gene deoxythymidylate kinase Neighboring gene THAP domain containing 4 Neighboring gene transient receptor potential cation channel subfamily M member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066323.1 Chromosome 9 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066323.1 Reference serCan2020 Primary Assembly

    Range
    20762598..20782712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009089327.4 → XP_009087575.1  cysteine protease ATG4B isoform X1

    UniProtKB/TrEMBL
    A0A8C9UCQ0
    Conserved Domains (1) summary
    pfam03416
    Location:38 → 335
    Peptidase_C54; Peptidase family C54

  2. XM_050978130.1 → XP_050834087.1  cysteine protease ATG4B isoform X2

RNA

  1. XR_007778274.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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