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COL6A2 collagen type VI alpha 2 chain [ Acanthisitta chloris (rifleman) ]

Gene ID: 103806074, updated on 11-Mar-2024

Summary

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Gene symbol
COL6A2
Gene description
collagen type VI alpha 2 chain
Locus tag
N310_10396
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthisitta chloris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Acanthisittidae; Acanthisitta
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM69581v1 (GCF_000695815.1) Unplaced Scaffold NW_008683035.1 (110..10825, complement)

NW_008683035.1Genomic Context describing neighboring genes Neighboring gene collagen type VI alpha 1 chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008683035.1 Unplaced Scaffold Reference ASM69581v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-2(VI) chain
Names
Collagen alpha-2(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthisitta chloris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69581v1

Genomic

  1. NW_008683035.1 Reference ASM69581v1

    Range
    110..10825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009078744.1 → XP_009076992.1  collagen alpha-2(VI) chain

    Conserved Domains (3) summary
    pfam01391
    Location:442 → 503
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:40 → 220
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl17173
    Location:490 → 545
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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