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COL1A2 collagen type I alpha 2 chain [ Acanthisitta chloris (rifleman) ]

Gene ID: 103800569, updated on 11-Mar-2024

Summary

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Gene symbol
COL1A2
Gene description
collagen type I alpha 2 chain
Locus tag
N310_11189
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthisitta chloris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Acanthisittidae; Acanthisitta
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
37
Annotation release Status Assembly Chr Location
100 current ASM69581v1 (GCF_000695815.1) Unplaced Scaffold NW_008668602.1 (449..26976)

NW_008668602.1Genomic Context describing neighboring genes Neighboring gene transfer RNA asparagine (anticodon GUU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008668602.1 Unplaced Scaffold Reference ASM69581v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen type I trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-2(I) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthisitta chloris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69581v1

Genomic

  1. NW_008668602.1 Reference ASM69581v1

    Range
    449..26976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009072948.1 → XP_009071196.1  collagen alpha-2(I) chain

    See identical proteins and their annotated locations for XP_009071196.1

    UniProtKB/TrEMBL
    A0A091MRR0
    Conserved Domains (2) summary
    pfam01391
    Location:452 → 509
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:884 → 1117
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
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