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CPSF2 cleavage and polyadenylation specific factor 2 [ Merops nubicus (carmine bee-eater) ]

Gene ID: 103777143, updated on 11-Apr-2024

Summary

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Gene symbol
CPSF2
Gene description
cleavage and polyadenylation specific factor 2
Locus tag
N331_11615
Gene type
protein coding
RefSeq status
MODEL
Organism
Merops nubicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Meropidae; Merops
Orthologs
human mouse all
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Genomic context

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See CPSF2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM69184v1 (GCF_000691845.1) Unplaced Scaffold NW_008622188.1 (303..12905)

NW_008622188.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008622188.1 Unplaced Scaffold Reference ASM69184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 2
Names
Cleavage and polyadenylation specificity factor subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Merops nubicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69184v1

Genomic

  1. NW_008622188.1 Reference ASM69184v1

    Range
    303..12905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008944684.1 → XP_008942932.1  cleavage and polyadenylation specificity factor subunit 2

    See identical proteins and their annotated locations for XP_008942932.1

    Conserved Domains (5) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    COG1236
    Location:5 → 385
    YSH1; RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
    pfam07521
    Location:527 → 566
    RMMBL; RNA-metabolizing metallo-beta-lactamase
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
Nucleotide Protein
Heading Accession and Version

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