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ZC3H12B zinc finger CCCH-type containing 12B [ Manacus vitellinus (golden-collared manakin) ]

Gene ID: 103767713, updated on 11-Mar-2024

Summary

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Gene symbol
ZC3H12B
Gene description
zinc finger CCCH-type containing 12B
Locus tag
N305_03827
See related
Ensembl:ENSMVIG00005001061
Gene type
protein coding
RefSeq status
MODEL
Organism
Manacus vitellinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM171598v3 (GCF_001715985.3) Unplaced Scaffold NW_021939395.1 (18766..44995)
101 previous assembly ASM171598v1 (GCF_001715985.1) Unplaced Scaffold NW_017219620.1 (23609..50251)

NW_021939395.1Genomic Context describing neighboring genes Neighboring gene zinc finger C4H2-type containing Neighboring gene LAS1 like ribosome biogenesis factor Neighboring gene uncharacterized LOC108639341

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12B
Names
putative ribonuclease ZC3H12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manacus vitellinus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM171598v3

Genomic

  1. NW_021939395.1 Reference ASM171598v3

    Range
    18766..44995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018070656.2 → XP_017926145.1  probable ribonuclease ZC3H12B

    Conserved Domains (4) summary
    cd18729
    Location:194 → 324
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:104 → 145
    UBA_6; UBA-like domain
    pfam18044
    Location:361 → 379
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:797 → 831
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  2. XM_018070658.2 → XP_017926147.1  probable ribonuclease ZC3H12B

    Conserved Domains (4) summary
    cd18729
    Location:194 → 324
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:104 → 145
    UBA_6; UBA-like domain
    pfam18044
    Location:361 → 379
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:797 → 831
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  3. XM_008934909.3 → XP_008933157.1  probable ribonuclease ZC3H12B

    Related
    ENSMVIP00005001360.1
    Conserved Domains (4) summary
    cd18729
    Location:194 → 324
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:104 → 145
    UBA_6; UBA-like domain
    pfam18044
    Location:361 → 379
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:797 → 831
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  4. XM_018070659.2 → XP_017926148.1  probable ribonuclease ZC3H12B

    Conserved Domains (4) summary
    cd18729
    Location:194 → 324
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:104 → 145
    UBA_6; UBA-like domain
    pfam18044
    Location:361 → 379
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:797 → 831
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  5. XM_029959087.1 → XP_029814947.1  probable ribonuclease ZC3H12B

    Conserved Domains (4) summary
    cd18729
    Location:194 → 324
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:104 → 145
    UBA_6; UBA-like domain
    pfam18044
    Location:361 → 379
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:797 → 831
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
Nucleotide Protein
Heading Accession and Version

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