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CLCN4 chloride voltage-gated channel 4 [ Manacus vitellinus (golden-collared manakin) ]

Gene ID: 103760324, updated on 11-Mar-2024

Summary

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Gene symbol
CLCN4
Gene description
chloride voltage-gated channel 4
Locus tag
N305_04096
See related
Ensembl:ENSMVIG00005015670
Gene type
protein coding
RefSeq status
MODEL
Organism
Manacus vitellinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
103 current ASM171598v3 (GCF_001715985.3) Unplaced Scaffold NW_021940813.1 (16568985..16611288, complement)
101 previous assembly ASM171598v1 (GCF_001715985.1) Unplaced Scaffold NW_017220230.1 (17249023..17288675, complement)

NW_021940813.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 6 Neighboring gene midline 1 Neighboring gene WWC family member 3 Neighboring gene claudin 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H(+)/Cl(-) exchange transporter 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manacus vitellinus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM171598v3

Genomic

  1. NW_021940813.1 Reference ASM171598v3

    Range
    16568985..16611288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025896229.1 → XP_025752014.1  H(+)/Cl(-) exchange transporter 4

    UniProtKB/TrEMBL
    A0A093QGZ2
    Conserved Domains (2) summary
    cd03684
    Location:78 → 584
    ClC_3_like; ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has ...
    cd04591
    Location:595 → 745
    CBS_pair_voltage-gated_CLC_euk_bac; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the voltage gated CLC (chloride channel) in eukaryotes and bacteria

  2. XM_008926809.4 → XP_008925057.1  H(+)/Cl(-) exchange transporter 4

    See identical proteins and their annotated locations for XP_008925057.1

    UniProtKB/TrEMBL
    A0A093QGZ2
    Related
    ENSMVIP00005022340.1
    Conserved Domains (2) summary
    cd03684
    Location:78 → 584
    ClC_3_like; ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has ...
    cd04591
    Location:595 → 745
    CBS_pair_voltage-gated_CLC_euk_bac; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the voltage gated CLC (chloride channel) in eukaryotes and bacteria
Nucleotide Protein
Heading Accession and Version

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