U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 [ Manacus vitellinus (golden-collared manakin) ]

Gene ID: 103759509, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
AGAP1
Gene description
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Locus tag
N305_10529
See related
Ensembl:ENSMVIG00005002549
Gene type
protein coding
RefSeq status
MODEL
Organism
Manacus vitellinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
103 current ASM171598v3 (GCF_001715985.3) Unplaced Scaffold NW_021940761.1 (2175308..2455851)
101 previous assembly ASM171598v1 (GCF_001715985.1) Unplaced Scaffold NW_017220233.1 (2401517..2695313)

NW_021940761.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108641656 Neighboring gene transient receptor potential cation channel subfamily M member 8 Neighboring gene ankyrin repeat and SOCS box protein 18 Neighboring gene gastrulation brain homeobox 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1
Names
Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Manacus vitellinus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM171598v3

Genomic

  1. NW_021940761.1 Reference ASM171598v3

    Range
    2175308..2455851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018084483.3 → XP_017939972.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X4

    Related
    ENSMVIP00005003248.1
    Conserved Domains (5) summary
    cd04103
    Location:34 → 195
    Centaurin_gamma; Centaurin gamma (CENTG) GTPase
    cd01250
    Location:310 → 531
    PH_AGAP; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain
    sd00045
    Location:675 → 705
    ANK; ANK repeat [structural motif]
    cd08836
    Location:549 → 656
    ArfGap_AGAP; ArfGAP with GTPase domain, ANK repeat and PH domains
    pfam12796
    Location:675 → 765
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_029964414.1 → XP_029820274.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1

    Conserved Domains (5) summary
    cd04103
    Location:34 → 195
    Centaurin_gamma; Centaurin gamma (CENTG) GTPase
    cd01250
    Location:310 → 585
    PH_AGAP; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain
    sd00045
    Location:729 → 759
    ANK; ANK repeat [structural motif]
    cd08836
    Location:603 → 710
    ArfGap_AGAP; ArfGAP with GTPase domain, ANK repeat and PH domains
    pfam12796
    Location:729 → 782
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_029964416.1 → XP_029820276.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X3

    Conserved Domains (5) summary
    cd04103
    Location:34 → 195
    Centaurin_gamma; Centaurin gamma (CENTG) GTPase
    cd01250
    Location:310 → 559
    PH_AGAP; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain
    sd00045
    Location:703 → 733
    ANK; ANK repeat [structural motif]
    cd08836
    Location:577 → 684
    ArfGap_AGAP; ArfGAP with GTPase domain, ANK repeat and PH domains
    pfam12796
    Location:703 → 756
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_029964415.1 → XP_029820275.1  arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X2

    Conserved Domains (5) summary
    cd04103
    Location:34 → 191
    Centaurin_gamma; Centaurin gamma (CENTG) GTPase
    cd01250
    Location:306 → 581
    PH_AGAP; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain
    sd00045
    Location:725 → 755
    ANK; ANK repeat [structural motif]
    cd08836
    Location:599 → 706
    ArfGap_AGAP; ArfGAP with GTPase domain, ANK repeat and PH domains
    pfam12796
    Location:725 → 778
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.