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ALX1 ALX homeobox 1 [ Manacus vitellinus (golden-collared manakin) ]

Gene ID: 103759145, updated on 11-Mar-2024

Summary

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Gene symbol
ALX1
Gene description
ALX homeobox 1
Locus tag
N305_06328
See related
Ensembl:ENSMVIG00005002677
Gene type
protein coding
RefSeq status
MODEL
Organism
Manacus vitellinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus
Orthologs
human mouse all
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Genomic context

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See ALX1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM171598v3 (GCF_001715985.3) Unplaced Scaffold NW_021940682.1 (25670696..25688796, complement)
101 previous assembly ASM171598v1 (GCF_001715985.1) Unplaced Scaffold NW_017220150.1 (26750271..26768683, complement)

NW_021940682.1Genomic Context describing neighboring genes Neighboring gene neurotensin Neighboring gene Ras association domain family member 9 Neighboring gene leucine rich repeats and IQ motif containing 1 Neighboring gene solute carrier family 6 member 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ALX homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manacus vitellinus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM171598v3

Genomic

  1. NW_021940682.1 Reference ASM171598v3

    Range
    25670696..25688796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008925482.4 → XP_008923730.1  ALX homeobox protein 1

    UniProtKB/TrEMBL
    A0A093Q0U8
    Related
    ENSMVIP00005003425.1
    Conserved Domains (2) summary
    pfam00046
    Location:136 → 190
    Homeobox; Homeobox domain
    pfam03826
    Location:303 → 321
    OAR; OAR domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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