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ABCA1 ATP binding cassette subfamily A member 1 [ Manacus vitellinus (golden-collared manakin) ]

Gene ID: 103758408, updated on 11-Mar-2024

Summary

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Gene symbol
ABCA1
Gene description
ATP binding cassette subfamily A member 1
See related
Ensembl:ENSMVIG00005019915
Gene type
protein coding
RefSeq status
MODEL
Organism
Manacus vitellinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
50
Annotation release Status Assembly Chr Location
103 current ASM171598v3 (GCF_001715985.3) Unplaced Scaffold NW_021940917.1 (17087771..17169635, complement)
101 previous assembly ASM171598v1 (GCF_001715985.1) Unplaced Scaffold NW_017220280.1 (18377260..18459089, complement)

NW_021940917.1Genomic Context describing neighboring genes Neighboring gene nudC domain-containing protein 2 pseudogene Neighboring gene nipsnap homolog 3A Neighboring gene solute carrier family 44 member 1 Neighboring gene solute carrier family 27 member 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipid-transporting ATPase ABCA1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manacus vitellinus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM171598v3

Genomic

  1. NW_021940917.1 Reference ASM171598v3

    Range
    17087771..17169635 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018086003.2 → XP_017941492.2  phospholipid-transporting ATPase ABCA1 isoform X2

    Conserved Domains (1) summary
    TIGR01257
    Location:1 → 2236
    rim_protein; retinal-specific rim ABC transporter

  2. XM_018086002.2 → XP_017941491.2  phospholipid-transporting ATPase ABCA1 isoform X1

    Conserved Domains (1) summary
    TIGR01257
    Location:1 → 2237
    rim_protein; retinal-specific rim ABC transporter
Nucleotide Protein
Heading Accession and Version

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