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HDAC9 histone deacetylase 9 [ Manacus vitellinus (golden-collared manakin) ]

Gene ID: 103754541, updated on 11-Mar-2024

Summary

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Gene symbol
HDAC9
Gene description
histone deacetylase 9
See related
Ensembl:ENSMVIG00005000719
Gene type
protein coding
RefSeq status
MODEL
Organism
Manacus vitellinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
103 current ASM171598v3 (GCF_001715985.3) Unplaced Scaffold NW_021940535.1 (25212628..25636382, complement)
101 previous assembly ASM171598v1 (GCF_001715985.1) Unplaced Scaffold NW_017219981.1 (25901245..26391655, complement)

NW_021940535.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase I subunit F Neighboring gene Fer3 like bHLH transcription factor Neighboring gene sorting nexin 13 Neighboring gene aryl hydrocarbon receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manacus vitellinus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM171598v3

Genomic

  1. NW_021940535.1 Reference ASM171598v3

    Range
    25212628..25636382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029961711.1 → XP_029817571.1  histone deacetylase 9 isoform X2

    Conserved Domains (2) summary
    cd10163
    Location:58 → 147
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd10009
    Location:673 → 1051
    HDAC9; Histone deacetylase 9

  2. XM_018075494.2 → XP_017930983.1  histone deacetylase 9 isoform X7

  3. XM_018075493.2 → XP_017930982.1  histone deacetylase 9 isoform X7

  4. XM_018075492.2 → XP_017930981.1  histone deacetylase 9 isoform X7

  5. XM_018075491.2 → XP_017930980.1  histone deacetylase 9 isoform X6

  6. XM_018075490.2 → XP_017930979.1  histone deacetylase 9 isoform X5

  7. XM_018075489.2 → XP_017930978.1  histone deacetylase 9 isoform X4

  8. XM_018075488.2 → XP_017930977.1  histone deacetylase 9 isoform X3

  9. XM_018075486.2 → XP_017930975.1  histone deacetylase 9 isoform X1

  10. XM_018075496.2 → XP_017930985.1  histone deacetylase 9 isoform X8

    Related
    ENSMVIP00005000928.1
Nucleotide Protein
Heading Accession and Version

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