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Setd5 SET domain containing 5 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103751412, updated on 11-Mar-2024

Summary

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Gene symbol
Setd5
Gene description
SET domain containing 5
See related
Ensembl:ENSNGAG00000021493
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008357033.1 (3800574..3887013)

NW_008357033.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA51 Neighboring gene uncharacterized LOC115067908 Neighboring gene LHFPL tetraspan subfamily member 4 Neighboring gene transfer RNA valine (anticodon UAC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008357033 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SETD5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008357033.1 Reference S.galili_v1.0 Primary Assembly

    Range
    3800574..3887013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008854820.3 → XP_008853042.1  histone-lysine N-methyltransferase SETD5 isoform X2

    Conserved Domains (2) summary
    PHA03307
    Location:1139 → 1421
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:298 → 447
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  2. XM_029557062.1 → XP_029412922.1  histone-lysine N-methyltransferase SETD5 isoform X6

    Conserved Domains (2) summary
    PHA03307
    Location:1120 → 1402
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:279 → 428
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  3. XM_008854824.3 → XP_008853046.1  histone-lysine N-methyltransferase SETD5 isoform X7

    Conserved Domains (2) summary
    PHA03307
    Location:1119 → 1401
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:305 → 454
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  4. XM_008854818.3 → XP_008853040.1  histone-lysine N-methyltransferase SETD5 isoform X1

    See identical proteins and their annotated locations for XP_008853040.1

    Conserved Domains (2) summary
    PHA03307
    Location:1146 → 1428
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:305 → 454
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  5. XM_029557058.1 → XP_029412918.1  histone-lysine N-methyltransferase SETD5 isoform X1

    Conserved Domains (2) summary
    PHA03307
    Location:1146 → 1428
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:305 → 454
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  6. XM_029557059.1 → XP_029412919.1  histone-lysine N-methyltransferase SETD5 isoform X1

    Conserved Domains (2) summary
    PHA03307
    Location:1146 → 1428
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:305 → 454
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  7. XM_008854822.3 → XP_008853044.1  histone-lysine N-methyltransferase SETD5 isoform X4

    Conserved Domains (2) summary
    PHA03307
    Location:1127 → 1409
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:286 → 435
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  8. XM_029557066.1 → XP_029412926.1  histone-lysine N-methyltransferase SETD5 isoform X9

    Conserved Domains (2) summary
    PHA03307
    Location:1009 → 1291
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:168 → 317
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  9. XM_029557065.1 → XP_029412925.1  histone-lysine N-methyltransferase SETD5 isoform X9

    Conserved Domains (2) summary
    PHA03307
    Location:1009 → 1291
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:168 → 317
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  10. XM_029557064.1 → XP_029412924.1  histone-lysine N-methyltransferase SETD5 isoform X9

    Conserved Domains (2) summary
    PHA03307
    Location:1009 → 1291
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:168 → 317
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  11. XM_029557060.1 → XP_029412920.1  histone-lysine N-methyltransferase SETD5 isoform X3

    Conserved Domains (2) summary
    PHA03307
    Location:1133 → 1415
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:292 → 441
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  12. XM_029557068.1 → XP_029412928.1  histone-lysine N-methyltransferase SETD5 isoform X10

    Conserved Domains (2) summary
    PHA03307
    Location:1107 → 1389
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:266 → 415
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  13. XM_029557061.1 → XP_029412921.1  histone-lysine N-methyltransferase SETD5 isoform X5

    UniProtKB/TrEMBL
    A0A8C6RTP6
    Related
    ENSNGAP00000022705.1, ENSNGAT00000028393.1
    Conserved Domains (2) summary
    PHA03307
    Location:1126 → 1408
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:285 → 434
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  14. XM_029557063.1 → XP_029412923.1  histone-lysine N-methyltransferase SETD5 isoform X8

    Conserved Domains (2) summary
    PHA03307
    Location:996 → 1278
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:155 → 304
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins

  15. XM_029557067.1 → XP_029412927.1  histone-lysine N-methyltransferase SETD5 isoform X9

    Conserved Domains (2) summary
    PHA03307
    Location:1009 → 1291
    PHA03307; transcriptional regulator ICP4; Provisional
    cd19181
    Location:168 → 317
    SET_SETD5; SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins
Nucleotide Protein
Heading Accession and Version

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