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Nr1i3 nuclear receptor subfamily 1 group I member 3 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103745948, updated on 11-Mar-2024

Summary

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Gene symbol
Nr1i3
Gene description
nuclear receptor subfamily 1 group I member 3
See related
Ensembl:ENSNGAG00000012780
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008350788.1 (132855..156808)

NW_008350788.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial-like Neighboring gene Purkinje cell protein 4 like 1 Neighboring gene translocase of outer mitochondrial membrane 40 like Neighboring gene small nucleolar RNA SNORA67 Neighboring gene apolipoprotein A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008350788 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor subfamily 1 group I member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008350788.1 Reference S.galili_v1.0 Primary Assembly

    Range
    132855..156808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029570879.1 → XP_029426739.1  nuclear receptor subfamily 1 group I member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C6R0W3
    Related
    ENSNGAP00000010352.1, ENSNGAT00000015880.1
    Conserved Domains (2) summary
    cd07156
    Location:12 → 83
    NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
    cl11397
    Location:107 → 349
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_029570880.1 → XP_029426740.1  nuclear receptor subfamily 1 group I member 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C6R0W3
    Conserved Domains (2) summary
    cd07156
    Location:12 → 83
    NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
    cl11397
    Location:107 → 348
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  3. XM_029570878.1 → XP_029426738.1  nuclear receptor subfamily 1 group I member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C6R0W3
    Conserved Domains (2) summary
    cd07156
    Location:12 → 83
    NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
    cl11397
    Location:107 → 349
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  4. XM_029570881.1 → XP_029426741.1  nuclear receptor subfamily 1 group I member 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C6R0W3
    Conserved Domains (2) summary
    cl02596
    Location:1 → 44
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
    cl11397
    Location:68 → 310
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
Nucleotide Protein
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