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Srsf4 serine and arginine rich splicing factor 4 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103745906, updated on 11-Mar-2024

Summary

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Gene symbol
Srsf4
Gene description
serine and arginine rich splicing factor 4
See related
Ensembl:ENSNGAG00000012225
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008350771.1 (829678..857778)

NW_008350771.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type U Neighboring gene mitochondrial trans-2-enoyl-CoA reductase Neighboring gene collagen alpha-1(I) chain-like Neighboring gene transmembrane protein 200B Neighboring gene erythrocyte membrane protein band 4.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008350771 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008350771.1 Reference S.galili_v1.0 Primary Assembly

    Range
    829678..857778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008847926.3 → XP_008846148.1  serine/arginine-rich splicing factor 4

    UniProtKB/TrEMBL
    A0A8C6QVP0
    Related
    ENSNGAP00000009577.1, ENSNGAT00000015092.1
    Conserved Domains (3) summary
    cd12337
    Location:3 → 72
    RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    cd12600
    Location:104 → 175
    RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    TIGR01642
    Location:244 → 320
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
Nucleotide Protein
Heading Accession and Version

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