U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Itga5 integrin subunit alpha 5 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103738966, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Itga5
Gene description
integrin subunit alpha 5
See related
Ensembl:ENSNGAG00000013929
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008329576.1 (1552458..1576702, complement)

NW_008329576.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 84 Neighboring gene zinc finger protein 385A Neighboring gene small nucleolar RNA SNORA17 Neighboring gene gametocyte specific factor 1 Neighboring gene gametocyte specific factor 1 like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_008329576 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
integrin alpha-5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008329576.1 Reference S.galili_v1.0 Primary Assembly

    Range
    1552458..1576702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017799669.2 → XP_017655158.2  integrin alpha-5 isoform X3

    UniProtKB/TrEMBL
    A0A8C6W6X2
    Related
    ENSNGAP00000011953.1, ENSNGAT00000017508.1
    Conserved Domains (2) summary
    smart00191
    Location:442 → 496
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:543 → 975
    Integrin_alpha2; Integrin alpha

  2. XM_029566572.1 → XP_029422432.1  integrin alpha-5 isoform X2

    UniProtKB/TrEMBL
    A0A8C6W6X2
    Conserved Domains (2) summary
    smart00191
    Location:442 → 496
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:543 → 975
    Integrin_alpha2; Integrin alpha

  3. XM_008839176.3 → XP_008837398.2  integrin alpha-5 isoform X1

    UniProtKB/TrEMBL
    A0A8C6W6X2
    Related
    ENSNGAP00000011963.1, ENSNGAT00000017518.1
    Conserved Domains (2) summary
    smart00191
    Location:442 → 496
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:543 → 975
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.