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Cstf2t cleavage stimulation factor subunit 2 tau variant [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103732507, updated on 11-Mar-2024

Summary

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Gene symbol
Cstf2t
Gene description
cleavage stimulation factor subunit 2 tau variant
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Cstf2t in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008336314.1 (857107..860808, complement)

NW_008336314.1Genomic Context describing neighboring genes Neighboring gene protein kinase cGMP-dependent 1 Neighboring gene small nucleolar RNA SNORA40 Neighboring gene lysophospholipase-like protein 1 Neighboring gene V-type proton ATPase subunit E 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008336314 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage stimulation factor subunit 2 tau variant

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008336314.1 Reference S.galili_v1.0 Primary Assembly

    Range
    857107..860808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008831090.3 → XP_008829312.1  cleavage stimulation factor subunit 2 tau variant

    UniProtKB/TrEMBL
    A0A8C6QGT9
    Conserved Domains (3) summary
    cd12671
    Location:18 → 92
    RRM_CSTF2_CSTF2T; RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins
    pfam14304
    Location:576 → 616
    CSTF_C; Transcription termination and cleavage factor C-terminal
    pfam14327
    Location:112 → 191
    CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2
Nucleotide Protein
Heading Accession and Version

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