U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Syncrip synaptotagmin binding cytoplasmic RNA interacting protein [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103732147, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Syncrip
Gene description
synaptotagmin binding cytoplasmic RNA interacting protein
See related
Ensembl:ENSNGAG00000020647
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008335885.1 (808898..845794, complement)

NW_008335885.1Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase ecto Neighboring gene U6 spliceosomal RNA Neighboring gene sorting nexin 14 Neighboring gene cell division control protein 42 homolog Neighboring gene U1 spliceosomal RNA Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene uncharacterized LOC103732149 Neighboring gene small nucleolar RNA SNORD50

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_008335885 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 5'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CRD-mediated mRNA stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CRD-mediated mRNA stability complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
heterogeneous nuclear ribonucleoprotein Q

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008335885.1 Reference S.galili_v1.0 Primary Assembly

    Range
    808898..845794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008830672.3 → XP_008828894.1  heterogeneous nuclear ribonucleoprotein Q isoform X3

    UniProtKB/TrEMBL
    A0A8C6WB99
    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 553
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    pfam18360
    Location:34 → 103
    hnRNP_Q_AcD; Heterogeneous nuclear ribonucleoprotein Q acidic domain

  2. XM_008830671.3 → XP_008828893.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

    UniProtKB/TrEMBL
    A0A8C6WB99, A0A8C6WBG5
    Related
    ENSNGAP00000021499.1, ENSNGAT00000027179.1
    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 557
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    pfam18360
    Location:34 → 103
    hnRNP_Q_AcD; Heterogeneous nuclear ribonucleoprotein Q acidic domain

  3. XM_008830673.3 → XP_008828895.1  heterogeneous nuclear ribonucleoprotein Q isoform X5

    Conserved Domains (1) summary
    TIGR01648
    Location:5 → 459
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  4. XM_008830670.2 → XP_008828892.1  heterogeneous nuclear ribonucleoprotein Q isoform X1

    See identical proteins and their annotated locations for XP_008828892.1

    UniProtKB/TrEMBL
    A0A8C6WB99
    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 615
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    pfam18360
    Location:34 → 103
    hnRNP_Q_AcD; Heterogeneous nuclear ribonucleoprotein Q acidic domain

  5. XM_008830675.3 → XP_008828897.1  heterogeneous nuclear ribonucleoprotein Q isoform X4

    UniProtKB/TrEMBL
    A0A8C6WB99
    Related
    ENSNGAP00000021509.1, ENSNGAT00000027188.1
    Conserved Domains (1) summary
    TIGR01648
    Location:5 → 517
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.