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Trim35 tripartite motif containing 35 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103730005, updated on 11-Mar-2024

Summary

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Gene symbol
Trim35
Gene description
tripartite motif containing 35
See related
Ensembl:ENSNGAG00000023890
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008333388.1 (4012438..4035394)

NW_008333388.1Genomic Context describing neighboring genes Neighboring gene neuronal acetylcholine receptor subunit alpha-2-like Neighboring gene protein tyrosine kinase 2 beta Neighboring gene stathmin 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008333388 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 35

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008333388.1 Reference S.galili_v1.0 Primary Assembly

    Range
    4012438..4035394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029561143.1 → XP_029417003.1  tripartite motif-containing protein 35 isoform X2

    Conserved Domains (5) summary
    smart00502
    Location:149 → 247
    BBC; B-Box C-terminal domain
    cd00162
    Location:37 → 76
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:112 → 155
    Bbox_SF; B-box-type zinc finger superfamily
    cl02614
    Location:287 → 465
    SPRY; SPRY domain
    cl17238
    Location:34 → 78
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_008828148.3 → XP_008826370.2  tripartite motif-containing protein 35 isoform X1

    UniProtKB/TrEMBL
    A0A8C6S2A4
    Related
    ENSNGAP00000026161.1, ENSNGAT00000031888.1
    Conserved Domains (5) summary
    COG1322
    Location:149 → 268
    RmuC; DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair]
    cd00162
    Location:37 → 76
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:112 → 155
    Bbox_SF; B-box-type zinc finger superfamily
    cl02614
    Location:319 → 497
    SPRY; SPRY domain
    cl17238
    Location:34 → 78
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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