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U2SURP U2 snRNP associated SURP domain containing [ Ursus maritimus (polar bear) ]

Gene ID: 103681545, updated on 11-Mar-2024

Summary

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Gene symbol
U2SURP
Gene description
U2 snRNP associated SURP domain containing
See related
Ensembl:ENSUMAG00000012672
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See U2SURP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024424453.1 (20437602..20493129, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907045.1 (16700790..16752885, complement)

NW_024424453.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A9 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene carbohydrate sulfotransferase 2 Neighboring gene uncharacterized LOC103678337 Neighboring gene heat shock protein HSP 90-beta-like Neighboring gene progestin and adipoQ receptor family member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U2 snRNP-associated SURP motif-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024424453.1 Reference ASM1731132v1 Primary Assembly

    Range
    20437602..20493129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008711141.2 → XP_008709363.2  U2 snRNP-associated SURP motif-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A384DQW1
    Conserved Domains (5) summary
    smart00582
    Location:541 → 676
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 352
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:429 → 480
    Surp; Surp module
    cd12223
    Location:273 → 356
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:836 → 884
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  2. XM_040636710.1 → XP_040492644.1  U2 snRNP-associated SURP motif-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8M1GLR0
    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  3. XM_040636711.1 → XP_040492645.1  U2 snRNP-associated SURP motif-containing protein isoform X3

    UniProtKB/TrEMBL
    A0A8M1GCP2
    Conserved Domains (3) summary
    smart00582
    Location:132 → 267
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    pfam01805
    Location:20 → 71
    Surp; Surp module
    cd21370
    Location:427 → 475
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins
Nucleotide Protein
Heading Accession and Version

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