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PKD2 polycystin 2, transient receptor potential cation channel [ Ursus maritimus (polar bear) ]

Gene ID: 103677886, updated on 11-Mar-2024

Summary

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Gene symbol
PKD2
Gene description
polycystin 2, transient receptor potential cation channel
See related
Ensembl:ENSUMAG00000004242
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024426996.1 (12921728..12974028, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907284.1 (126274..169341)

NW_024426996.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1K Neighboring gene uncharacterized LOC121101405 Neighboring gene ATP binding cassette subfamily G member 2 (JR blood group) Neighboring gene secreted phosphoprotein 1 Neighboring gene matrix extracellular phosphoglycoprotein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated sodium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in release of sequestered calcium ion into cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024426996.1 Reference ASM1731132v1 Primary Assembly

    Range
    12921728..12974028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040625078.1 → XP_040481012.1  polycystin-2

    UniProtKB/TrEMBL
    A0A8M1FGH3
    Conserved Domains (4) summary
    cd15902
    Location:756 → 784
    EFh_HEF; EF-hand motif [structural motif]
    cl23634
    Location:726 → 794
    EFh_HEF; EF-hand, calcium binding motif, found in the hexa-EF hand proteins family
    pfam08016
    Location:271 → 689
    PKD_channel; Polycystin cation channel
    pfam18109
    Location:836 → 870
    Fer4_24; Ferredoxin I 4Fe-4S cluster domain
Nucleotide Protein
Heading Accession and Version

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