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LYSMD1 LysM domain containing 1 [ Ursus maritimus (polar bear) ]

Gene ID: 103667522, updated on 11-Mar-2024

Summary

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Gene symbol
LYSMD1
Gene description
LysM domain containing 1
See related
Ensembl:ENSUMAG00000002659
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See LYSMD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024423564.1 (2129608..2137267)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907142.1 (2066067..2073485)

NW_024423564.1Genomic Context describing neighboring genes Neighboring gene tropomodulin 4 Neighboring gene sodium channel modifier 1 Neighboring gene TNF alpha induced protein 8 like 2 Neighboring gene semaphorin 6C Neighboring gene GA binding protein transcription factor subunit beta 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
lysM and putative peptidoglycan-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024423564.1 Reference ASM1731132v1 Primary Assembly

    Range
    2129608..2137267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008695678.2 → XP_008693900.1  lysM and putative peptidoglycan-binding domain-containing protein 1

    See identical proteins and their annotated locations for XP_008693900.1

    UniProtKB/TrEMBL
    A0A384CHL5
    Related
    ENSUMAP00000003058.1
    Conserved Domains (2) summary
    cd00118
    Location:42 → 84
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:42 → 82
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

RNA

  1. XR_569779.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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