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PRPF40A pre-mRNA processing factor 40 homolog A [ Ursus maritimus (polar bear) ]

Gene ID: 103659469, updated on 11-Mar-2024

Summary

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Gene symbol
PRPF40A
Gene description
pre-mRNA processing factor 40 homolog A
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024423343.1 (75211480..75265996)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907079.1 (3763106..3817263, complement)

NW_024423343.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S4-like Neighboring gene ADP ribosylation factor like GTPase 6 interacting protein 6 Neighboring gene formin like 2 Neighboring gene uncharacterized LOC103659468

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 40 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024423343.1 Reference ASM1731132v1 Primary Assembly

    Range
    75211480..75265996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040644890.1 → XP_040500824.1  pre-mRNA-processing factor 40 homolog A isoform X9

    UniProtKB/TrEMBL
    A0A8M1H4W6
    Conserved Domains (2) summary
    smart00441
    Location:748 → 802
    FF; Contains two conserved F residues
    COG5104
    Location:142 → 685
    PRP40; Splicing factor [RNA processing and modification]

  2. XM_040644857.1 → XP_040500791.1  pre-mRNA-processing factor 40 homolog A isoform X3

    UniProtKB/TrEMBL
    A0A8M1GYH4
    Conserved Domains (2) summary
    smart00441
    Location:807 → 861
    FF; Contains two conserved F residues
    COG5104
    Location:219 → 744
    PRP40; Splicing factor [RNA processing and modification]

  3. XM_040644841.1 → XP_040500775.1  pre-mRNA-processing factor 40 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A8M1GZY3
    Conserved Domains (2) summary
    smart00441
    Location:825 → 879
    FF; Contains two conserved F residues
    COG5104
    Location:219 → 762
    PRP40; Splicing factor [RNA processing and modification]

  4. XM_040644852.1 → XP_040500786.1  pre-mRNA-processing factor 40 homolog A isoform X2

    UniProtKB/TrEMBL
    A0A8M1GYG9
    Conserved Domains (2) summary
    smart00441
    Location:821 → 875
    FF; Contains two conserved F residues
    COG5104
    Location:219 → 758
    PRP40; Splicing factor [RNA processing and modification]

  5. XM_040644863.1 → XP_040500797.1  pre-mRNA-processing factor 40 homolog A isoform X4

    UniProtKB/TrEMBL
    A0A8M1H121
    Conserved Domains (2) summary
    smart00441
    Location:803 → 857
    FF; Contains two conserved F residues
    COG5104
    Location:219 → 740
    PRP40; Splicing factor [RNA processing and modification]

  6. XM_040644867.1 → XP_040500801.1  pre-mRNA-processing factor 40 homolog A isoform X5

    UniProtKB/TrEMBL
    A0A8M1GYI4
    Conserved Domains (2) summary
    smart00441
    Location:783 → 837
    FF; Contains two conserved F residues
    COG5104
    Location:177 → 720
    PRP40; Splicing factor [RNA processing and modification]

  7. XM_040644878.1 → XP_040500812.1  pre-mRNA-processing factor 40 homolog A isoform X7

    UniProtKB/TrEMBL
    A0A8M1H137
    Conserved Domains (2) summary
    smart00441
    Location:765 → 819
    FF; Contains two conserved F residues
    COG5104
    Location:177 → 702
    PRP40; Splicing factor [RNA processing and modification]

  8. XM_040644886.1 → XP_040500820.1  pre-mRNA-processing factor 40 homolog A isoform X8

    UniProtKB/TrEMBL
    A0A8M1H023
    Conserved Domains (2) summary
    smart00441
    Location:761 → 815
    FF; Contains two conserved F residues
    COG5104
    Location:177 → 698
    PRP40; Splicing factor [RNA processing and modification]

  9. XM_008686983.2 → XP_008685205.2  pre-mRNA-processing factor 40 homolog A isoform X6

    UniProtKB/TrEMBL
    A0A384BSS0
    Conserved Domains (2) summary
    smart00441
    Location:779 → 833
    FF; Contains two conserved F residues
    COG5104
    Location:177 → 716
    PRP40; Splicing factor [RNA processing and modification]
Nucleotide Protein
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