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PHF3 PHD finger protein 3 [ Ursus maritimus (polar bear) ]

Gene ID: 103657373, updated on 11-Mar-2024

Summary

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Gene symbol
PHF3
Gene description
PHD finger protein 3
See related
Ensembl:ENSUMAG00000010700
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024425452.1 (17671302..17756433)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907051.1 (701167..776051)

NW_024425452.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23-like Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene eyes shut homolog Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene 40S ribosomal protein S15a-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024425452.1 Reference ASM1731132v1 Primary Assembly

    Range
    17671302..17756433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040643602.1 → XP_040499536.1  PHD finger protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A452U220, A0A8M1GUY0
    Conserved Domains (4) summary
    smart00510
    Location:931 → 1031
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    TIGR01385
    Location:849 → 1053
    TFSII; transcription elongation factor S-II
    TIGR01622
    Location:1933 → 2035
    SF-CC1; splicing factor, CC1-like family
    cd15638
    Location:719 → 769
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)

  2. XM_040643604.1 → XP_040499538.1  PHD finger protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A452U220, A0A8M1GUY4
    Conserved Domains (4) summary
    smart00510
    Location:843 → 943
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    TIGR01385
    Location:761 → 965
    TFSII; transcription elongation factor S-II
    TIGR01622
    Location:1845 → 1947
    SF-CC1; splicing factor, CC1-like family
    cd15638
    Location:631 → 681
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)

  3. XM_040643603.1 → XP_040499537.1  PHD finger protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A452U220, A0A8M1GXI1
    Conserved Domains (4) summary
    smart00510
    Location:884 → 984
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    TIGR01385
    Location:802 → 1006
    TFSII; transcription elongation factor S-II
    TIGR01622
    Location:1886 → 1988
    SF-CC1; splicing factor, CC1-like family
    cd15638
    Location:672 → 722
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)

  4. XM_040643601.1 → XP_040499535.1  PHD finger protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A452U220, A0A8M1GWI5
    Conserved Domains (4) summary
    smart00510
    Location:940 → 1040
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    TIGR01385
    Location:858 → 1062
    TFSII; transcription elongation factor S-II
    TIGR01622
    Location:1942 → 2044
    SF-CC1; splicing factor, CC1-like family
    cd15638
    Location:728 → 778
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)

  5. XM_040643605.1 → XP_040499539.1  PHD finger protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A8M1H459
    Conserved Domains (4) summary
    smart00510
    Location:200 → 300
    TFS2M; Domain in the central regions of transcription elongation factor S-II (and elsewhere)
    TIGR01385
    Location:118 → 322
    TFSII; transcription elongation factor S-II
    TIGR01622
    Location:1202 → 1304
    SF-CC1; splicing factor, CC1-like family
    cl22851
    Location:1 → 38
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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