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XRCC5 X-ray repair cross complementing 5 [ Corvus brachyrhynchos (American crow) ]

Gene ID: 103625415, updated on 11-Mar-2024

Summary

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Gene symbol
XRCC5
Gene description
X-ray repair cross complementing 5
Locus tag
N302_11001
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus brachyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ASM69197v1 (GCF_000691975.1) Unplaced Scaffold NW_008236764.1 (1123569..1171773, complement)

NW_008236764.1Genomic Context describing neighboring genes Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 Neighboring gene membrane associated ring-CH-type finger 4 Neighboring gene transmembrane protein 169 Neighboring gene peroxisomal trans-2-enoyl-CoA reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008236764.1 Unplaced Scaffold Reference ASM69197v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to X-ray IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to gamma radiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ku70:Ku80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
X-ray repair cross-complementing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus brachyrhynchos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69197v1

Genomic

  1. NW_008236764.1 Reference ASM69197v1

    Range
    1123569..1171773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008644833.2 → XP_008643055.1  X-ray repair cross-complementing protein 5

    UniProtKB/TrEMBL
    A0A091ED81
    Conserved Domains (3) summary
    cd00873
    Location:224 → 517
    KU80; Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the ...
    pfam08785
    Location:571 → 683
    Ku_PK_bind; Ku C terminal domain like
    cl00057
    Location:12 → 222
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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