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ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit [ Corvus brachyrhynchos (American crow) ]

Gene ID: 103623742, updated on 11-Mar-2024

Summary

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Gene symbol
ERCC8
Gene description
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
Locus tag
N302_08549
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus brachyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM69197v1 (GCF_000691975.1) Unplaced Scaffold NW_008236213.1 (1288083..1321256)

NW_008236213.1Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 15 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 2 Neighboring gene ELOVL fatty acid elongase 7 Neighboring gene DEP domain containing 1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008236213.1 Unplaced Scaffold Reference ASM69197v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4A-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleotide-excision repair complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA excision repair protein ERCC-8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus brachyrhynchos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69197v1

Genomic

  1. NW_008236213.1 Reference ASM69197v1

    Range
    1288083..1321256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017743920.1 → XP_017599409.1  DNA excision repair protein ERCC-8 isoform X2

  2. XM_017743929.1 → XP_017599418.1  DNA excision repair protein ERCC-8 isoform X3

    UniProtKB/TrEMBL
    A0A091EAY4

  3. XM_008642894.2 → XP_008641116.1  DNA excision repair protein ERCC-8 isoform X1

    UniProtKB/TrEMBL
    A0A091EAY4
    Conserved Domains (3) summary
    COG2319
    Location:1 → 304
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:45 → 81
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:1 → 304
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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