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CIRBP cold inducible RNA binding protein [ Corvus brachyrhynchos (American crow) ]

Gene ID: 103622136, updated on 11-Mar-2024

Summary

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Gene symbol
CIRBP
Gene description
cold inducible RNA binding protein
Locus tag
N302_05649
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus brachyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See CIRBP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM69197v1 (GCF_000691975.1) Unplaced Scaffold NW_008240034.1 (1474261..1478115)

NW_008240034.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F1 subunit delta Neighboring gene midnolin Neighboring gene ephrin A2 Neighboring gene uncharacterized LOC108449045

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008240034.1 Unplaced Scaffold Reference ASM69197v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cold-inducible RNA-binding protein
Names
Cold-inducible RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus brachyrhynchos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69197v1

Genomic

  1. NW_008240034.1 Reference ASM69197v1

    Range
    1474261..1478115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008641038.2 → XP_008639260.1  cold-inducible RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A091FU46
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif (RRM) found in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  2. XM_017743833.1 → XP_017599322.1  cold-inducible RNA-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A091FU46
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif (RRM) found in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  3. XM_008641039.1 → XP_008639261.1  cold-inducible RNA-binding protein isoform X2

    See identical proteins and their annotated locations for XP_008639261.1

    UniProtKB/TrEMBL
    A0A091FU46
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif (RRM) found in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins
Nucleotide Protein
Heading Accession and Version

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