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LRP8 LDL receptor related protein 8 [ Corvus brachyrhynchos (American crow) ]

Gene ID: 103615090, updated on 11-Mar-2024

Summary

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Gene symbol
LRP8
Gene description
LDL receptor related protein 8
Locus tag
N302_09187
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus brachyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current ASM69197v1 (GCF_000691975.1) Unplaced Scaffold NW_008238126.1 (5400065..5566009, complement)

NW_008238126.1Genomic Context describing neighboring genes Neighboring gene CXXC motif containing zinc binding protein Neighboring gene mago homolog, exon junction complex subunit Neighboring gene uncharacterized LOC108446562 Neighboring gene DMRT like family B with proline rich C-terminal 1 Neighboring gene GLIS family zinc finger 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008238126.1 Unplaced Scaffold Reference ASM69197v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
low-density lipoprotein receptor-related protein 8
Names
Low-density lipoprotein receptor-related protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus brachyrhynchos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69197v1

Genomic

  1. NW_008238126.1 Reference ASM69197v1

    Range
    5400065..5566009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017733478.1 → XP_017588967.1  low-density lipoprotein receptor-related protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A091EPV4
    Conserved Domains (9) summary
    smart00192
    Location:132 → 164
    LDLa; Low-density lipoprotein receptor domain class A
    smart00135
    Location:494 → 536
    LY; Low-density lipoprotein-receptor YWTD domain
    smart00179
    Location:295 → 325
    EGF_CA; Calcium-binding EGF-like domain
    cd00112
    Location:94 → 128
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00057
    Location:178 → 213
    Ldl_recept_a; Low-density lipoprotein receptor domain class A
    pfam00058
    Location:428 → 466
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    cl00104
    Location:54 → 90
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam14670
    Location:259 → 293
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl26547
    Location:336 → 554
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]

  2. XM_017733477.1 → XP_017588966.1  low-density lipoprotein receptor-related protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A091EPV4
    Conserved Domains (8) summary
    smart00192
    Location:132 → 164
    LDLa; Low-density lipoprotein receptor domain class A
    smart00135
    Location:535 → 577
    LY; Low-density lipoprotein-receptor YWTD domain
    smart00179
    Location:336 → 366
    EGF_CA; Calcium-binding EGF-like domain
    COG3391
    Location:377 → 595
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
    cd00112
    Location:94 → 128
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00057
    Location:178 → 213
    Ldl_recept_a; Low-density lipoprotein receptor domain class A
    pfam00058
    Location:469 → 507
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    pfam14670
    Location:300 → 334
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
Heading Accession and Version

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