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TSKU tsukushi, small leucine rich proteoglycan [ Galeopterus variegatus (Sunda flying lemur) ]

Gene ID: 103589883, updated on 11-Mar-2024

Summary

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Gene symbol
TSKU
Gene description
tsukushi, small leucine rich proteoglycan
Gene type
protein coding
RefSeq status
MODEL
Organism
Galeopterus variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Dermoptera; Cynocephalidae; Galeopterus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current G_variegatus-3.0.2 (GCF_000696425.1) Unplaced Scaffold NW_007726847.1 (410361..423160, complement)

NW_007726847.1Genomic Context describing neighboring genes Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 Neighboring gene alkaline ceramidase 3 Neighboring gene olfactory guanylyl cyclase GC-D-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007726847 unplaced scaffold reference G_variegatus-3.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tsukushin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Galeopterus variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference G_variegatus-3.0.2 Primary Assembly

Genomic

  1. NW_007726847.1 Reference G_variegatus-3.0.2 Primary Assembly

    Range
    410361..423160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008571936.1 → XP_008570158.1  tsukushin

    See identical proteins and their annotated locations for XP_008570158.1

    Conserved Domains (3) summary
    cd00116
    Location:42 → 295
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:66 → 89
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:67 → 124
    LRR_8; Leucine rich repeat

  2. XM_008571938.1 → XP_008570160.1  tsukushin

    See identical proteins and their annotated locations for XP_008570160.1

    Conserved Domains (3) summary
    cd00116
    Location:42 → 295
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:66 → 89
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:67 → 124
    LRR_8; Leucine rich repeat

  3. XM_008571937.1 → XP_008570159.1  tsukushin

    See identical proteins and their annotated locations for XP_008570159.1

    Conserved Domains (3) summary
    cd00116
    Location:42 → 295
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:66 → 89
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:67 → 124
    LRR_8; Leucine rich repeat

  4. XM_008571939.1 → XP_008570161.1  tsukushin

    See identical proteins and their annotated locations for XP_008570161.1

    Conserved Domains (3) summary
    cd00116
    Location:42 → 295
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:66 → 89
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:67 → 124
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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