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PRPF18 pre-mRNA processing factor 18 [ Equus przewalskii (Przewalski's horse) ]

Gene ID: 103555620, updated on 11-Mar-2024

Summary

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Gene symbol
PRPF18
Gene description
pre-mRNA processing factor 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus przewalskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Burgud (GCF_000696695.1) Unplaced Scaffold NW_007674182.1 (477762..525068, complement)

NW_007674182.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing 4A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007674182 unplaced scaffold reference Burgud Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus przewalskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Burgud Primary Assembly

Genomic

  1. NW_007674182.1 Reference Burgud Primary Assembly

    Range
    477762..525068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008527303.1 → XP_008525525.1  pre-mRNA-splicing factor 18 isoform X1

    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:204 → 340
    Prp18; Prp18 domain

  2. XM_008527304.1 → XP_008525526.1  pre-mRNA-splicing factor 18 isoform X2

    See identical proteins and their annotated locations for XP_008525526.1

    Conserved Domains (2) summary
    smart00500
    Location:79 → 122
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:191 → 328
    Prp18; Prp18 domain
Nucleotide Protein
Heading Accession and Version

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