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TLR9 toll like receptor 9 [ Equus przewalskii (Przewalski's horse) ]

Gene ID: 103546489, updated on 11-Mar-2024

Summary

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Gene symbol
TLR9
Gene description
toll like receptor 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus przewalskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TLR9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Burgud (GCF_000696695.1) Unplaced Scaffold NW_007673172.1 (330507..335337, complement)

NW_007673172.1Genomic Context describing neighboring genes Neighboring gene POC1 centriolar protein A Neighboring gene 5'-aminolevulinate synthase 1 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1M Neighboring gene twinfilin actin binding protein 2 Neighboring gene WD repeat domain 82

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007673172 unplaced scaffold reference Burgud Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pattern recognition receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interleukin-6 production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: toll-like receptor 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus przewalskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Burgud Primary Assembly

Genomic

  1. NW_007673172.1 Reference Burgud Primary Assembly

    Range
    330507..335337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008513095.1 → XP_008511317.1  LOW QUALITY PROTEIN: toll-like receptor 9

    Conserved Domains (5) summary
    cd00116
    Location:476 → 737
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:752 → 764
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:476 → 497
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:496 → 555
    LRR_8; Leucine rich repeat
    cl23749
    Location:868 → 1007
    TIR_2; TIR domain
Nucleotide Protein
Heading Accession and Version

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