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PHF3 PHD finger protein 3 [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103536167, updated on 11-Mar-2024

Summary

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Gene symbol
PHF3
Gene description
PHD finger protein 3
Locus tag
N300_07841
See related
EnsemblRapid:ENSCAAG00010013385
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 3 NC_044246.1 (89453167..89498836, complement)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007621863.1 (3744797..3783053, complement)

Chromosome 3 - NC_044246.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene eyes shut homolog Neighboring gene protein tyrosine phosphatase 4A1 Neighboring gene lengsin, lens protein with glutamine synthetase domain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044246.1 Reference bCalAnn1_v1.p

    Range
    89453167..89498836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030447162.1 → XP_030303022.1  PHD finger protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A091IGP1
    Conserved Domains (6) summary
    PRK12678
    Location:1813 → 1927
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:1871 → 1973
    SF-CC1; splicing factor, CC1-like family
    TIGR03835
    Location:120 → 393
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cd15638
    Location:643 → 693
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
    pfam07500
    Location:850 → 963
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1126 → 1272
    SPOC; SPOC domain

  2. XM_030447156.1 → XP_030303016.1  PHD finger protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A091IGP1
    Conserved Domains (6) summary
    PRK12678
    Location:1813 → 1927
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:1871 → 1973
    SF-CC1; splicing factor, CC1-like family
    TIGR03835
    Location:120 → 393
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cd15638
    Location:643 → 693
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
    pfam07500
    Location:850 → 963
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1126 → 1272
    SPOC; SPOC domain

  3. XM_030447154.1 → XP_030303014.1  PHD finger protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A091IGP1
    Conserved Domains (6) summary
    PRK12678
    Location:1901 → 2015
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:1959 → 2061
    SF-CC1; splicing factor, CC1-like family
    TIGR03835
    Location:208 → 481
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cd15638
    Location:731 → 781
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
    pfam07500
    Location:938 → 1051
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1214 → 1360
    SPOC; SPOC domain

  4. XM_030447158.1 → XP_030303018.1  PHD finger protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A091IGP1
    Conserved Domains (6) summary
    PRK12678
    Location:1813 → 1927
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:1871 → 1973
    SF-CC1; splicing factor, CC1-like family
    TIGR03835
    Location:120 → 393
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cd15638
    Location:643 → 693
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
    pfam07500
    Location:850 → 963
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1126 → 1272
    SPOC; SPOC domain

  5. XM_030447157.1 → XP_030303017.1  PHD finger protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A091IGP1
    Conserved Domains (6) summary
    PRK12678
    Location:1813 → 1927
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:1871 → 1973
    SF-CC1; splicing factor, CC1-like family
    TIGR03835
    Location:120 → 393
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cd15638
    Location:643 → 693
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
    pfam07500
    Location:850 → 963
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1126 → 1272
    SPOC; SPOC domain

  6. XM_030447160.1 → XP_030303020.1  PHD finger protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A091IGP1
    Conserved Domains (6) summary
    PRK12678
    Location:1813 → 1927
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:1871 → 1973
    SF-CC1; splicing factor, CC1-like family
    TIGR03835
    Location:120 → 393
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cd15638
    Location:643 → 693
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
    pfam07500
    Location:850 → 963
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1126 → 1272
    SPOC; SPOC domain

  7. XM_030447159.1 → XP_030303019.1  PHD finger protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A091IGP1
    Conserved Domains (6) summary
    PRK12678
    Location:1813 → 1927
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:1871 → 1973
    SF-CC1; splicing factor, CC1-like family
    TIGR03835
    Location:120 → 393
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cd15638
    Location:643 → 693
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
    pfam07500
    Location:850 → 963
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1126 → 1272
    SPOC; SPOC domain

  8. XM_030447161.1 → XP_030303021.1  PHD finger protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A091IGP1
    Related
    ENSCAAP00010018564.1, ENSCAAT00010019706.1
    Conserved Domains (6) summary
    PRK12678
    Location:1813 → 1927
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:1871 → 1973
    SF-CC1; splicing factor, CC1-like family
    TIGR03835
    Location:120 → 393
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    cd15638
    Location:643 → 693
    PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
    pfam07500
    Location:850 → 963
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:1126 → 1272
    SPOC; SPOC domain

  9. XM_030447163.1 → XP_030303023.1  PHD finger protein 3 isoform X3

    Conserved Domains (6) summary
    PRK08581
    Location:867 → 1082
    PRK08581; amidase domain-containing protein
    PRK12678
    Location:1187 → 1301
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:1245 → 1347
    SF-CC1; splicing factor, CC1-like family
    pfam07500
    Location:224 → 337
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
    pfam07744
    Location:500 → 646
    SPOC; SPOC domain
    cl22851
    Location:28 → 67
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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