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SPG11 SPG11 vesicle trafficking associated, spatacsin [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103536018, updated on 11-Mar-2024

Summary

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Gene symbol
SPG11
Gene description
SPG11 vesicle trafficking associated, spatacsin
See related
EnsemblRapid:ENSCAAG00010000329
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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See SPG11 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
40
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 10 NC_044256.1 (21151781..21180642)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007621845.1 (328281..356223, complement)

Chromosome 10 - NC_044256.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 7 Neighboring gene cytosolic iron-sulfur assembly component 2A Neighboring gene eukaryotic translation initiation factor 3 subunit J Neighboring gene CTD small phosphatase like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axo-dendritic transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spatacsin
Names
SPG11, spatacsin vesicle trafficking associated
spastic paraplegia 11 (autosomal recessive)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044256.1 Reference bCalAnn1_v1.p

    Range
    21151781..21180642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030456934.1 → XP_030312794.1  spatacsin

    Related
    ENSCAAP00010000458.1, ENSCAAT00010000464.1
    Conserved Domains (1) summary
    pfam14649
    Location:2073 → 2365
    Spatacsin_C; Spatacsin C-terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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