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HMG20B high mobility group 20B [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103532636, updated on 11-Mar-2024

Summary

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Gene symbol
HMG20B
Gene description
high mobility group 20B
Locus tag
N300_11638
See related
EnsemblRapid:ENSCAAG00010012510
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
12
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 28 NC_044273.1 (151884..158598)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007621053.1 (156228..161178)

Chromosome 28 - NC_044273.1Genomic Context describing neighboring genes Neighboring gene fizzy and cell division cycle 20 related 1 Neighboring gene major facilitator superfamily domain containing 12 Neighboring gene GIPC PDZ domain containing family member 3 Neighboring gene thromboxane A2 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044273.1 Reference bCalAnn1_v1.p

    Range
    151884..158598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030466472.1 → XP_030322332.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

    UniProtKB/TrEMBL
    A0A091IAF1
    Conserved Domains (1) summary
    cd01390
    Location:69 → 134
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  2. XM_030466470.1 → XP_030322330.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

    UniProtKB/TrEMBL
    A0A091IAF1
    Conserved Domains (1) summary
    cd01390
    Location:69 → 134
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  3. XM_030466474.1 → XP_030322334.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

    UniProtKB/TrEMBL
    A0A091IAF1
    Conserved Domains (1) summary
    cd01390
    Location:69 → 134
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  4. XM_030466475.1 → XP_030322335.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

    UniProtKB/TrEMBL
    A0A091IAF1
    Related
    ENSCAAP00010017285.1, ENSCAAT00010018327.1
    Conserved Domains (1) summary
    cd01390
    Location:69 → 134
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  5. XM_030466473.1 → XP_030322333.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

    UniProtKB/TrEMBL
    A0A091IAF1
    Conserved Domains (1) summary
    cd01390
    Location:69 → 134
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
Nucleotide Protein
Heading Accession and Version

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