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RAE1 ribonucleic acid export 1 [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103532121, updated on 11-Mar-2024

Summary

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Gene symbol
RAE1
Gene description
ribonucleic acid export 1
Locus tag
N300_15745
See related
EnsemblRapid:ENSCAAG00010006304
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
13
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 20 NC_044265.1 (9637814..9645964)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007620763.1 (5495231..5501532, complement)

Chromosome 20 - NC_044265.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 7 Neighboring gene SPO11 initiator of meiotic double strand breaks Neighboring gene RNA binding motif protein 38 Neighboring gene uncharacterized LOC115599437

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA export factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044265.1 Reference bCalAnn1_v1.p

    Range
    9637814..9645964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030463225.1 → XP_030319085.1  mRNA export factor isoform X1

    UniProtKB/TrEMBL
    A0A091I776
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_030463224.1 → XP_030319084.1  mRNA export factor isoform X1

    UniProtKB/TrEMBL
    A0A091I776
    Related
    ENSCAAP00010008762.1, ENSCAAT00010009231.1
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_030463227.1 → XP_030319087.1  mRNA export factor isoform X2

    Conserved Domains (2) summary
    COG2319
    Location:33 → 308
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:42 → 96
    7WD40; WD40 repeat [structural motif]

  4. XM_030463226.1 → XP_030319086.1  mRNA export factor isoform X1

    UniProtKB/TrEMBL
    A0A091I776
    Conserved Domains (2) summary
    sd00039
    Location:42 → 84
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:40 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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