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LIMS1 LIM zinc finger domain containing 1 [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103530781, updated on 11-Mar-2024

Summary

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Gene symbol
LIMS1
Gene description
LIM zinc finger domain containing 1
See related
EnsemblRapid:ENSCAAG00010015174
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 1 NC_044244.1 (138071591..138108797)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007620371.1 (1439304..1475221, complement)

Chromosome 1 - NC_044244.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase family 1C member 4 Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene E3 SUMO-protein ligase RanBP2-like Neighboring gene coiled-coil domain containing 138

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and senescent cell antigen-like-containing domain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044244.1 Reference bCalAnn1_v1.p

    Range
    138071591..138108797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008496364.2 → XP_008494586.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X4

    Conserved Domains (5) summary
    cd09331
    Location:47 → 105
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:108 → 159
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:172 → 222
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:228 → 281
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:289 → 342
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  2. XM_030457661.1 → XP_030313521.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    Conserved Domains (5) summary
    cd09331
    Location:47 → 105
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:108 → 159
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:172 → 222
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:228 → 281
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:289 → 342
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  3. XM_008496363.2 → XP_008494585.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

    See identical proteins and their annotated locations for XP_008494585.1

    UniProtKB/TrEMBL
    A0A091I3P9
    Related
    ENSCAAP00010020884.1, ENSCAAT00010022350.1
    Conserved Domains (5) summary
    cd09331
    Location:72 → 130
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:133 → 184
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:197 → 247
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:253 → 306
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:314 → 367
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  4. XM_030457646.1 → XP_030313506.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

    Related
    ENSCAAP00010020882.1, ENSCAAT00010022348.1
    Conserved Domains (5) summary
    cd09331
    Location:72 → 130
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:133 → 184
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:197 → 247
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:253 → 306
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:314 → 367
    LIM5_PINCH; The fifth LIM domain of protein PINCH
Nucleotide Protein
Heading Accession and Version

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